After saving my billing document ,I noticed that my apart from tax condition type, my base price condition type and discount condition type comes with taxcode.
As per my basic understanding only condition type with tax category D, condition class tax comes with Tax code kindly let me know whether it is a standard behavior or not.
That's why I asked this question,i have tested the same what Mr Laskmipathi told seems to be working for me,pls find the screen shot attached.